Working with the Example Workflows¶

The repo ships with a rich examples/ folder covering every supported engine. Use them for quick testing and demos.

Snakemake¶

wf2wf convert -i examples/snake/basic/linear.smk \
              -o linear.dag \
              --out-format dagman

Generate a graph image:

snakemake --dag --snakefile examples/snake/basic/linear.smk | dot -Tpng > dag.png

wf2wf convert -i examples/nextflow/main.nf -o pipeline.cwl --out-format cwl

A simple script to convert every example and ensure none crash:

for f in examples/**/*.{smk,cwl,nf,wdl,ga}; do
    wf2wf info "$f" >/dev/null
done