Snakemake Cheat-Sheet

Feature	Status
shell: / script:	✅
Python run: blocks	✅ auto-script
Wildcards	✅
resources: cpu/mem/disk	✅ mapped
GPU resources	✅ mapped
conda:	✅ builds or reuse
container:	✅ Docker/Singularity
Checkpoints	🚧 partial (static graph only)
Dynamic rules	❌ unsupported

Supported directives

• threads, resources, envmodules, params, input/output, benchmark, log.

Unsupported

• pipe(), dynamic(), shadow, modules.